|
> CBIN Home > Publication
PUBLICATIONS BY CBIN FACULTY
2004 | 2005 | 2006 | 2007 |
2007Suci, PA; Varpness, Z; Gillitzer, E; Douglas, T; Young, M 2007. Targeting and photodynamic killing of a microbial pathogen using protein cage Architectures functionalized with a photosensitizer. LANGMUIR 23 (24): 12280-12286
Liepold, L; Anderson, S; Willits, D; Oltrogge, L; Frank, JA; Douglas, T; Young, M 2007. Viral capsids as MRI contrast agents. MAGNETIC RESONANCE IN MEDICINE 58 (5): 871-879
Wiedenheft, B; Flenniken, ML; Allen, MA; Young, M; Douglas, T 2007. Bioprospecting in high temperature environments; application of thermostable protein cages. SOFT MATTER 3 (9): 1091-1098
Suo, Z; Avci, R; Schweitzer, MH; Deliorman, M 2007. Porphyrin as an ideal biomarker in the search for extraterrestrial life. ASTROBIOLOGY 7 (4): 605-615
Groenewold, GS; Cortez, MM; Gianotto, AK; Gresham, GL; Olson, JE; Fox, RV; White, BM; Bauer, WF; Avci, R; Deliorman, M; Williams, E
2007. Surface analysis of particulates from laboratory hood exhaust manifold.SURFACE AND INTERFACE ANALYSIS 39 (6): 547-553
Drobizhev, M; Makarov, NS; Rebane, A; Wolleb, H; Spahni, H 2007. Very efficient two-photon induced photo-tautomerization in non-symmetrical phthalocyanines. JOURNAL OF LUMINESCENCE 128 (2): 217-222
Makarov, NS; Rebane, A; Drobizhev, M; Wolleb, H; Spahni, H 2007. Optimizing two-photon absorption for volumetric optical data storage. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICS 24 (8): 1874-1885
Rogers, JE; Slagle, JE; Krein, DM; Burke, AR; Hall, BC; Fratini, A; McLean, DG; Fleitz, PA; Cooper, TM; Drobizhev, M; Makarov, NS; Rebane, A; Kim, KY; Farley, R; Schanze, KS. 2007. Platinum acetylide two-photon chromophores. INORGANIC CHEMISTRY 46 (16): 6483-6494
Rebane, A; Christensson, N; Drobizhev, M; Stepanenko, Y; Spangler, CW. 2007. Quantum interference between multi photon absorption pathways in organic solid. JOURNAL OF LUMINESCENCE 127 (1): 28-33
Schmehl, A; Vaithyanathan, V; Herrnberger, A; Thiel, S; Richter, C; Liberati, M; Heeg, T; Rockerath, M; Kourkoutis, LF; Muhlbauer, S; Boni, P; Muller, DA; Barash, Y; Schubert, U; Idzerda, Y; Mannhart, J; Schlom, DG. 2007. Epitaxial integration of the highly spin-polarized ferromagnetic semiconductor EuO with silicon and GaN. NATURE MATERIALS 6 (11): 882-887
Bettinger, JS; Chopdekar, RV; Liberati, M; Neulinger, JR; Chshiev, M; Takamura, Y; Alldredge, LMB; Arenholz, E; Idzerda, YU; Stacy, AM; Butler, WH; Suzuki, Y. 2007. Magnetism and transport of CuCr2Se4 thin films. JOURNAL OF MAGNETISM AND MAGNETIC MATERIALS 318 (2): 65-73
Gilmore, K; Idzerda, YU; Stiles, MD. 2007. Identification of the dominant precession-damping mechanism in Fe, Co, and Ni by first-principles calculations. PHYSICAL REVIEW LETTERS 99 (2): 27204
Drobizhev, M; Stepanenko, Y; Rebane A; Wilson CJ; Screen, TEO; Anderson, HL. 2007. Strong cooperatie enhancement of two-photon absorption in double-strand conjugated porphyrin ladder arrays. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 128 (38): 12432-12433
Drobizhev, M; Makarov, NS; Stepanenko, Y; Rebane A;. 2007. Near-infrared two-photon absorption in phthalocyanines: Enhancement of lowest gerade-gerade transition by symmetrical electron-accepting substitution. JOURNAL OF CHEMICAL PHYSICS 124 (22): 224701
Larson, ET; Eilers, B; Menon, S; Reiter, D; Ortmann, A; Young, MJ; Lawrence, CM. 2007. A winged-helix protein from suffiblobus turreted icosahedral virus points toward stabilizing disulfide bonds in the intracellular proteins of a hyperthermophilic virus. VIROLOGY 368 (2): 249-261
Larson, ET; Eilers, BJ; Reiter, D; Ortmann, A; Young, MJ; Lawrence, CM. 2007. A new binding protein highly conserved in diverse crenarchaeal viruses. VIROLOGY 363 (2): 387-396
Taylor RM, Maaty WS, Lord CI, Hamilton T, Burritt JB, Bothner B, Jesaitis, A.J. 2007. Cloning, sequence analysis and confirmation of derived gene sequences for three epitope-mapped monoclonal antibodies against human phagocyte flavocytochrome b. Mol Immunol 44: 625-37
2006
Varpness Z, Shoopman C, Peters JW, Young M, Douglas T. 2006. H2 catalysis by Pt nanoparticles in Ferritin. ACS Symposium Series in press
Uchida M, Klem M, Flenniken M, Allen M, Varpness Z, et al. 2006. Biological Containers: Protein Cages as Multifunctional Nano-platforms. Advanced Materials in press
Taylor RM, Baniulis D, Burritt JB, Gripentrog JM, Lord CI, Riesselman, M. H.Maaty, W., Bothner BP, Angel, T. E., Dratz, E. A., Linton, G. F., Malech, H. L., Jesaitis, A. J.. 2006. Analysis of human phagocyte flavocytochrome B by mass spectrometry. J Biol Chem
Tang J, Johnson JM, Dryden KA, Young MJ, Zlotnick A, Johnson JE. 2006. The role of subunit hinges and molecular "switches" in the control of viral capsid polymorphism. J Struct Biol 154: 59-67
Szilagyi RK, Winslow MA. 2006. On the accuracy of density functional theory for iron-sulfur clusters. J Comput Chem 27: 1385-97
Suci P, Klem M, Douglas T, Young M. 2006. Assembly of multilayer films incorporating a viral proetin cage architecture. Langmuir DOI: 1a0612062
Steunou AS, Bhaya D, Bateson MM, Melendrez MC, Ward DM, Brecht, E. Peters JW, Kuhl, M., Grossman, A. R.. 2006. In situ analysis of nitrogen fixation and metabolic switching in unicellular thermophilic cyanobacteria inhabiting hot spring microbial mats. Proc Natl Acad Sci U S A 103: 2398-403
Speir JA, Bothner B, Qu C, Willits DA, Young MJ, Johnson JE. 2006. Enhanced local symmetry interactions globally stabilize a mutant virus capsid that maintains infectivity and capsid dynamics. J Virol 80: 3582-91
Sen S, Peters JW. 2006. The thermal adaptation of the nitrogenase Fe protein from thermophilic Methanobacter thermoautotrophicus. Proteins 62: 450-60
Sen S, Krishnakumar A, McClead J, Johnson MK, Seefeldt LC, Szilagyi, RK, Peters, JW. 2006. Insights into the role of nucleotide-dependent conformational change in nitrogenase catalysis: Structural characterization of the nitrogenase Fe protein Leu127 deletion variant with bound MgATP. J Inorg Biochem 100: 1041-52
Schwab DE, Tard C, Brecht E, Peters JW, Pickett CJ, Szilagyi RK. 2006. On the electronic structure of the hydrogenase H-cluster. Chem Commun (Camb): 3696-8
Schwab DE, Tard C, Brecht E, Peters JW, Pickett CJ, Szilagyi RK. 2006. Delocalized electronic structure of hydrogenase H-cluster Probed by X-ray Absorption Spectroscopy and density functional theory. . Chemical Communications: 3696-8
Resnick DA, Gilmore K, Idzerda YU, Klem MT, Allen M, Arenholz E., Douglas T, Young, M. 2006. Magnetic Properties of Co3O4 nanoparticles mineralized in ferritin. Journal of Applied Physics 99: 08Q501
Ramsey B, Wiedenheft B, Allen M, Gauss GH, Lawrence CM, Young M, Douglas T, 2006. Dps-like protein from the hyperthermophilic archaeaon Pyrococcus furiosis. Journal of Inorganic Biochemistry 100: 1061-8
Peters JW, Szilagyi RK, Naumov A, Douglas T. 2006. A radical solution for the biosynthesis of the H-cluster of hydrogenase. FEBS Lett 580: 363-7
Peters JW, Szilagyi RK. 2006. Exploring new frontiers of nitrogenase structure and mechanism. Curr Opin Chem Biol 10: 101-8
Pandey AS, Nocek BP, Clark DD, Ensign SA, Peters JW. 2006. Structure of the Mixed Disulfide Intermediate of the Disulfide Oxidoreductase, 2 Ketopropyl Coenzyme M Oxidoreductase/Carboxylase. Biocehmistry 45: 113-20
Pandey AS, Nocek B, Clark DD, Ensign SA, Peters JW. 2006. Mechanistic implications of the structure of the mixed-disulfide intermediate of the disulfide oxidoreductase, 2-ketopropyl-coenzyme M oxidoreductase/carboxylase. Biochemistry 45: 113-20
Ortmann A, Wiedenheft B, Douglas T, Young M. 2006. Hot crenarchaeal viruses reveal deep evolutionary connections. Nature Review Microbiology 4: 520-8
Maaty WS, Ortmann AC, Dlakic M, Schulstad K, Hilmer JK, Liepold, L. Weidenheft B, Khayat R, Douglas T, Young MJ, Bothner B. 2006. Characterization of the archaeal thermophile Sulfolobus turreted icosahedral virus validates an evolutionary link among double-stranded DNA viruses from all domains of life. J Virol 80: 7625-35
Larson ET, Reiter D, Young M, Lawrence CM. 2006. Structure of A197 from Sulfolobus turreted icosahedral virus: a crenarchaeal viral glycosyltransferase exhibiting the GT-A fold. J Virol 80: 7636-44
Krishnakumar AM, Nocek BP, Clark DD, Ensign SA, Peters JW. 2006. Structural basis for stereoselectivity in the (R)- and (S)-hydroxypropylthioethanesulfonate dehydrogenases. Biochemistry 45: 8831-40
Gillitzer E, Suci P, Young M, Douglas T. 2006. Functional asymmetry in a protein cage architecture through controlled assembly. Small 2: 962-6
Gauss GH, Benas P, Wiedenheft B, Young M, Douglas T, Lawrence CM. 2006. Structure of the DPS-like protein from Sulfolobus solfataricus reveals a bacterioferritin-like dimetal binding site within a DPS-like dodecameric assembly. Biochemistry 45: 10815-27
Flenniken ML, Willits DA, Harmsen AL, Liepold LO, Harmsen AG, Young MJ, Douglas T. 2006. Melanoma and lymphocyte cell-specific targeting incorporated into a heat shock protein cage architecture. Chem Biol 13: 161-70
Flenniken ML, Willits DA, Harmsen AL, Liepold LO, Harmsen AG, Young MJ, Douglas T. 2006. Tumor and Lymphocyte Targeting Incorporated into a Heat Shock Protein Cage Architecture. Chemistry and Biology 13: 161-70
Douglas T, Young M. 2006. Viruses: Making friends with old foes. Science 312: 873-5
Barry RC, Young MJ, Stedman KM, Dratz EA. 2006. Proteomic mapping of the hyperthermophilic and acidophilic archaeon Sulfolobus solfataricus P2. Electrophoresis 27: 2970-83
2005
Young M, Snyder J, Wiedenheft B, Spuhler J, Roberto F, Douglas T. 2005. Archael Viruses from Yellowstone's High Temperature Environments. Presented at Geothermal Biology and Geochemistry in Yellowstone National Park, Yellowstone National Park
Wiedenheft B, Mosolf J, Willits D, Yeager M, Dryden KA, Young M, Douglas T. 2005. An archaeal antioxidant: characterization of a Dps-like protein from Sulfolobus solfataricus. Proc Natl Acad Sci U S A 102: 10551-6
Varpness Z, Peters JW, Young M, Douglas T. 2005. Biomimetic synthesis of a H-2 catalyst using a protein cage architecture. Nano Letters 5: 2306-9
Usselman RJ, Klem MT, Allen M, Douglas T, Singel DJ, Willits, D., Young M, Gilmore K, Idzerda Y. 2005. Electron Magnetic Resonance of Iron Oxide Nanoparticles Mineralized in Protein Cages. Journal of Applied Physics 97: 10M523
Szilagyi RK, Schwab DE. 2005. Sulfur K-edge X-ray absorption spectroscopy as an experimental probe for S-nitroso proteins. Biochem Biophys Res Commun 330: 60-4
Suci PA, Klem MT, Douglas T, Young M. 2005. Influence of electrostatic interactions on the surface adsorption of a viral protein cage. Langmuir 21: 8686-93
Liepold LO, Revis J, Allen MA, Oltrogge L, Young M, Douglas T. 2005. Structural Transitions in Cowpea Chlorotic Mottle Virus (CCMV). Physical Biology 2: 166-72
Klem MT, Young M, Douglas T. 2005. Biomimetic Approaches to the Synthesis of Magnetic Nanoparticles. Materials Today 8: 28-37
Klem M, Willits D, Solis DJ, Belcher A, Young M, Douglas T. 2005. Bio-Inspired Synthesis of Protein-Encapsulated CoPt Nanoparticles. Advanced Functional Materials 15
Khayat R, Tang L, Larson ET, Lawrence CM, Young M, Johnson JE. 2005. Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses. Proc Natl Acad Sci U S A 102: 18944-9
Johnson JM, Tang J, Nyame Y, Willits D, Young MJ, Zlotnick A. 2005. Regulating self-assembly of spherical oligomers. Nano Lett 5: 765-70
Hosein H-A, Strongin DR, Douglas T, Rosso K. 2005. A Bioengineering Approach to the production of metal and metal oxide nanoparticles. Nanotechnology and the Environment ACS Symposium Series 890: 230-7
Gilmore K, Idzerda YU, Klem MT, Allen M, Douglas T, Young M. 2005. Surface contribution to the Anisotropy energy of spherical magnetite particles. Journal of Applied Physics 97: 10B301
Frank P, Benfatto M, Szilagyi RK, D'Angelo P, Della Longa S, Hodgson KO. 2005. The solution structure of [Cu(aq)]2+ and its implications for rack-induced bonding in blue copper protein active sites. Inorg Chem 44: 1922-33
Flenniken ML, Liepold LO, Crowley BE, Willits DA, Young MJ, Douglas T. 2005. Selective attachment and release of a chemotherapeutic agent from the interior of a protein cage architecture. Chem Commun (Camb): 447-9
Elgren TE, Zadvorny OA, Brecht E, Douglas T, Zorin NA, Maroney MJ, Peters JW. 2005. Immobilization of Active Hydrogenases by Encapsulation in Polymeric Porous Gels. Nano Letters 5: 2085-7
Copik AJ, Nocek BP, Swierczek SI, Ruebush S, Jang SB, Meng L, D'Souza VM, Peters JW, Bennett B, Holz RC. 2005. EPR and X-ray crystallographic characterization of the product-bound form of the MnII-loaded methionyl aminopeptidase from Pyrococcus furiosus. Biochemistry 44: 121-9
Botero LM, D'Imperio S, Burr M, McDermott TR, Young M, Hassett DJ. 2005. Poly(A) polymerase modification and reverse transcriptase PCR amplification of environmental RNA. Appl Environ Microbiol 71: 1267-75
Allen MA, Douglas T, Nest D, Schoonen M, Strongin DR. 2005. Charge Development on Ferritin: An Electrokinetic study of a protein containing a ferrihydrite nanoparticle. Nanotechnology and the Environment ACS Symposium Series 890: 226-9
Allen MA, Bulte JWM, Liepold LO, Basu G, Zywicke HA, Frank JA, Young M, Douglas T. 2005. Gd(III)-bound to a Viral Protein Cage: An MR Contrast Agent with Unusually High Relaxivity. Magnetic Resonance in Medicine 54: 807-12
Allen M, Bulte JW, Liepold L, Basu G, Zywicke HA, Frank JA, Young M, Douglas T. 2005. Paramagnetic viral nanoparticles as potential high-relaxivity magnetic resonance contrast agents. Magn Reson Med 54: 807-12
2004
Wiedenheft B, Stedman K, Roberto F, Willits D, Gleske AK, Zoeller L, Snyder J, Douglas T, Young M. 2004. Comparative genomic analysis of hyperthermophilic archaeal Fuselloviridae viruses. J Virol 78: 1954-61
Szilagyi RK, Frank P, DeBeer George S, Hedman B, Hodgson KO. 2004. High covalence in CuSO4 and the radicalization of sulfate: an X-ray absorption and density functional study. Inorg Chem 43: 8318-29
Snyder JC, Spuhler J, Wiedenheft B, Roberto FF, Douglas T, Young MJ. 2004. Effects of culturing on the population structure of a hyperthermophilic virus. Microb Ecol 48: 561-6
Sen S, Igarashi R, Smith A, Johnson MK, Seefeldt LC, Peters JW. 2004. A conformational mimic of the MgATP-bound "on state" of the nitrogenase iron protein. Biochemistry 43: 1787-97
Rice G, Tang L, Stedman K, Roberto F, Spuhler J, Gillitzer E, Johnson JE, Douglas T,
Young M.2004. The structure of a thermophilic archaeal virus shows a double-stranded DNA viral capsid type that spans all domains of life. Proc Natl Acad Sci U S A 101: 7716-20
Nocek B, Boyd J, Ensign SA, Peters JW. 2004. Crystallization and preliminary X-ray analysis of an acetone carboxylase from Xanthobacter autotrophicus strain Py2. Acta Crystallogr D Biol Crystallogr 60: 385-7
Kraft P, Oeckinghaus A, Kummel D, Gauss GH, Gilmore J, Wiedenheft B, Young M,
Lawrence CM. 2004. Crystal structure of F-93 from Sulfolobus spindle-shaped virus 1, a winged-helix DNA binding protein. J Virol 78: 11544-50
Kraft P, Kummel D, Oeckinghaus A, Gauss GH, Wiedenheft B, Young M, Lawrence CM. 2004. Structure of D-63 from sulfolobus spindle-shaped virus 1: surface properties of the dimeric four-helix bundle suggest an adaptor protein function. J Virol 78: 7438-42
Johnson JM, Willits DA, Young MJ, Zlotnick A. 2004. Interaction with capsid protein alters RNA structure and the pathway for in vitro assembly of cowpea chlorotic mottle virus. J Mol Biol 335: 455-64
Jang SB, Jeong MS, Seefeldt LC, Peters JW. 2004. Structural and biochemical implications of single amino acid substitutions in the nucleotide-dependent switch regions of the nitrogenase Fe protein from Azotobacter vinelandii. J Biol Inorg Chem 9: 1028-33
Hosein HA, Strongin DR, Allen M, Douglas T. 2004. Iron and cobalt oxide and metallic nanoparticles prepared from ferritin. Langmuir 20: 10283-7
Flenniken M, Allen M, Douglas T. 2004. Microbe manufacturers of semiconductors. Chem Biol 11: 1478-80
Ensign D, Young M, Douglas T. 2004. Photocatalytic synthesis of copper colloids from CuII by the ferrihydrite core of ferritin. Inorg Chem 43: 3441-6
Brumfield S, Willits D, Tang L, Johnson JE, Douglas T, Young M. 2004. Heterologous expression of the modified coat protein of Cowpea chlorotic mottle bromovirus results in the assembly of protein cages with altered architectures and function. J Gen Virol 85: 1049-53
Botero LM, Brown KB, Brumefield S, Burr M, Castenholz RW, Young M,
McDermott TR. 2004. Thermobaculum terrenum gen. nov., sp. nov.: a non-phototrophic gram-positive thermophile representing an environmental clone group related to the Chloroflexi (green non-sulfur bacteria) and Thermomicrobia. Arch Microbiol 181: 269-77
2003
Willits D, Zhao X, Olson N, Baker TS, Zlotnick A, Johnson JE, Douglas T, Young MJ. 2003. Effects of the cowpea chlorotic mottle bromovirus beta-hexamer structure on virion assembly. Virology 306: 280-8
Snyder JC, Stedman K, Rice G, Wiedenheft B, Spuhler J, Young MJ. 2003. Viruses of hyperthermophilic Archaea. Res Microbiol 154: 474-82
Klem MT, Willits D, Young M, Douglas T. 2003. 2-D array formation of genetically engineered viral cages on au surfaces and imaging by atomic force microscopy. J Am Chem Soc 125: 10806-7
Drennan CL, Peters JW. 2003. Surprising cofactors in metalloenzymes. Current Opinions in Structural Biology 13: 220-6
Douglas T. 2003. Materials science. A bright bio-inspired future. Science 299: 1192-3
Bulte JWM, Miller BR, Mizachi-Kol R, Einstein O, Reinhartz E, Zywicke HA, Douglas T, Franks JA. 2003. MR Microscopy of Magnetically Labeled Neurospheres Transplanted into the Lewis EAE Rat Brain. Magnetic Resonance Medicine 50: 201-5
Basu G, Allen M, Willits D, Young M, Douglas T. 2003. Metal binding to cowpea chlorotic mottle virus using terbium(III) fluorescence. J Biol Inorg Chem 8: 721-5
Allen M, Willits D, Young M, Douglas T. 2003. Constrained synthesis of cobalt oxide nanomaterials in the 12-subunit protein cage from Listeria innocua. Inorg Chem 42: 6300-5
.
|
